Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs7945840 | chr11:61167460 | A/C | 0.000103 | 406 | 15.63 | 18.7 | 14.47 | KM Plot |
| LGG | rs79548815 | chr4:182394260 | T/C | 8.45E-7 | 393 | 14.6 | 16.13 | 4.25 | KM Plot |
| LGG | rs7955890 | chr12:102285331 | C/T | 6.84E-5 | 402 | 14.43 | 19.17 | 20.9 | KM Plot |
| LGG | rs7960472 | chr12:102249438 | C/G | 0 | 400 | 14.75 | 21.7 | 0.23 | KM Plot |
| LGG | rs79842872 | chr4:854633 | C/T | 0 | 402 | 15.6 | 14.43 | 0.23 | KM Plot |
| LGG | rs79895071 | chr7:92778283 | A/G | 6.87E-5 | 404 | 15.6 | 14.6 | 8.97 | KM Plot |
| LGG | rs79960518 | chr3:153665963 | T/C | 0 | 407 | 15.17 | 16.47 | 0.23 | KM Plot |
| LGG | rs79963846 | chr5:155972593 | G/A | 5.06E-6 | 406 | 15.27 | 15.3 | 15.37 | KM Plot |
| LGG | rs79992476 | chr2:17830599 | T/G | 3.09E-8 | 405 | 15.32 | 15.05 | 7.33 | KM Plot |
| LGG | rs80001497 | chr7:55920664 | A/G | 0 | 401 | 15.2 | 15.93 | 3.77 | KM Plot |
| LGG | rs80008971 | chr2:17841482 | G/A | 1.5E-8 | 405 | 15.32 | 15.67 | 7.33 | KM Plot |
| LGG | rs80019372 | chr5:155950923 | G/A | 5.11E-6 | 404 | 15.6 | 15.17 | 15.37 | KM Plot |
| LGG | rs80028505 | chr6:35998388 | C/T | 9.5E-10 | 407 | 15.6 | 15.17 | 6.15 | KM Plot |
| LGG | rs80032177 | chr6:36049716 | G/A | 1.03E-9 | 405 | 15.57 | 15.18 | 6.15 | KM Plot |
| LGG | rs8006881 | chr14:23325637 | T/G | 2.46E-5 | 395 | 11.17 | 15.73 | 15.83 | KM Plot |